PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02003.1.g00080.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 373aa    MW: 42711 Da    PI: 9.3722
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02003.1.g00080.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.81.4e-19116163148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g+WT++Edell+d+v+q+G g+W+++++  g++R++k+c++rw +yl
  Zpz_sc02003.1.g00080.1.am.mk 116 KGPWTAQEDELLLDYVRQHGEGRWNSVSKLTGLKRSGKSCRLRWVNYL 163
                                   79********************************************97 PP

2Myb_DNA-binding50.45.1e-16169213147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   rg+ T++E+  ++++++++G++ W+tIar ++ gRt++++k++w+++
  Zpz_sc02003.1.g00080.1.am.mk 169 RGKITPQEESVILELHALWGNR-WSTIARSLP-GRTDNEIKNYWRTH 213
                                   8999******************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.538111163IPR017930Myb domain
SuperFamilySSF466894.4E-30114210IPR009057Homeodomain-like
SMARTSM007177.2E-17115165IPR001005SANT/Myb domain
PfamPF002495.2E-18116163IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-23117170IPR009057Homeodomain-like
CDDcd001675.54E-12118163No hitNo description
PROSITE profilePS5129424.933164218IPR017930Myb domain
SMARTSM007174.5E-15168216IPR001005SANT/Myb domain
PfamPF002499.1E-14169213IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-23171216IPR009057Homeodomain-like
CDDcd001671.38E-9173214No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MVCPCRGSST QHQEAQVLRY SRRGRAFGRN PTWQWGAPDS DFGLRRACAP IYMRQFTSPR  60
RLARSLRRRA ATVQVHKVDR LARSLRGEGE VGMMDGQFGM MDGQFGWGRE EGGWRKGPWT  120
AQEDELLLDY VRQHGEGRWN SVSKLTGLKR SGKSCRLRWV NYLRPDLKRG KITPQEESVI  180
LELHALWGNR WSTIARSLPG RTDNEIKNYW RTHFKKGKPS KNIERARARF LKQRREMQSQ  240
MLIQGQEQQQ QQMQQLKKPG DHDHAVTRQQ AAPAVSSPAP QHEDLQMMLL DMDDLLYQLC  300
PMSMSSCSSS YYHFHGGSVS ASAASEGSSE DQLDGGDTWG WGSLWNLDDM VDDIDGGWDS  360
SCPWLQEQGL AFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-241162167106B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0992831e-140AK099283.1 Oryza sativa Japonica Group cDNA clone:J023132O17, full insert sequence.
GenBankAK1118071e-140AK111807.1 Oryza sativa Japonica Group cDNA clone:J013104N22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002454181.11e-125hypothetical protein SORBIDRAFT_04g026210
TrEMBLC5XXQ51e-125C5XXQ5_SORBI; Putative uncharacterized protein Sb04g026210
STRINGSb04g026210.11e-125(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32433584
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13480.14e-63myb domain protein 79